Job Summary: 

• Assisting with the statistical design of projects making use of modern genomic technologies
• Develop and implement standardized protocols for analyzing data aimed at the development and validation of biomarkers for specific product lines
• Develop and implement workflows that perform analysis on genomic data across multiple platforms
• Understanding and ensuring compliance with genomic data reporting standards
• Underlying the development and validation of biomarkers in drug and diagnostic test development
• Responsible for report writing and data management
• Assisting with software development, validation and documentation within an ISO 9001:2008 compliant manner
• Performing statistical analysis of genomic data
• Using various tools for pathway analysis and systems biological interpretation of data, amongst others
• Coordinating training and workshops for capacity building

Skills on Resume: 

• Statistical Design (Hard Skills)
• Protocol Development (Hard Skills)
• Workflow Development (Hard Skills)
• Compliance Management (Hard Skills)
• Biomarker Development (Hard Skills)
• Software Development (Hard Skills)
• Statistical Analysis (Hard Skills)
• Coordination (Soft Skills)

Job Summary: 

• Helping the RPPA staff design antibody array
• Helps with image analyses, assesses quality control, processes and normalizes the RPPA data
• Responsible for generating reports for the RPPA core customers.
• Further analyzes antibody proteomics datasets using both parametric and non-parametric approaches.
• Maps bulk RNA-seq data and quantifies gene expression using cluster computing.
• Detects differentially expressed genes using multiple R analysis packages
• Run pathway enrichment, and generate visualizations including heatmaps.
• Maps and quantifies single-cell RNASeq data using cluster computing.
• Visualize cell types, gene markers, and enriched pathways will be generated.
• Review existing multimodal omics signatures and publicly available datasets
• Propose and execute the integrative analysis.
• Interprets results from similarity searches and integration of investigator and publicly available datasets.
• Trains junior analysts, graduate students, and postdocs in specific analysis techniques

Skills on Resume: 

• Antibody Array (Hard Skills)
• Image Analysis (Hard Skills)
• Quality Control (Hard Skills)
• Data Processing (Hard Skills)
• Report Generation (Hard Skills)
• Statistical Analysis (Hard Skills)
• Pathway Analysis (Hard Skills)

Job Summary: 

• Perform bioinformatic analysis on all samples, including genome assembly and annotation of genomes
• Provide sequencing and bioinformatic assistance in support of epidemic/pandemic response for viruses and other pathogens
• Support mission essential goals by utilizing skills in next-generation sequencing and related platforms, microarrays.
• Providing the reach-back support for bioinformatics analysis.
• Develop improved protocols for bioinformatics processes associated with high-throughput characterization.
• Providing the sequencing and bioinformatic analysis
• Securely store data files and provide results to customers, and raw data files.
• Operate the Core's cloud-based data processing pipeline.
• Ensure that samples are processed and released to Core users.
• Address Core users' questions about data analysis and processing.
• Perform project-specific, custom single-cell data analysis for Core users.

Skills on Resume: 

• Genome Assembly (Hard Skills)
• Epidemic/Pandemic Response (Hard Skills)
• NGS Support (Hard Skills)
• Microarray Analysis (Hard Skills)
• Bioinformatics Protocol (Hard Skills)
• Data Management (Hard Skills)
• Data Processing (Hard Skills)
• Communication (Soft Skills)

Job Summary: 

• Working with a team of bioinformaticians, statisticians, and software developers 
• Coordinate and manage resource and data-sharing efforts among a large consortium of researchers
• Facilitating data sharing across collaborating biomedical research labs 
• Developing tools, writing documentation, curating data, and maintaining project websites.
• Assisting in the development of standards and protocols
• Storing, describing, and sharing heterogeneous data and tools
• Developing use cases and requirements to inform the selection of data models and workflows for a variety of biomedical data types. 
• Assisting with the creation of dashboards, visualizations, and other resources for experimental and clinical biologists to explore and leverage data and analysis results
• Interacting with collaborators to identify data management needs and respond to requests for data and programmatic support

Skills on Resume: 

• Collaboration (Soft Skills)
• Quality Control (Hard Skills)
• Data Sharing (Soft Skills)
• Tool Development (Hard Skills)
• Protocols Development (Hard Skills)
• Data Management (Hard Skills)
• Visualization Creation (Hard Skills)

Job Summary: 

• Participate in the design, development, analysis and delivery of game-changing high-accuracy sequencing assays, sample prep methods and analysis tools.
• Analyze DNA and RNA sequencing data, both from solid tissue and liquid biopsy samples.
• Develop QC metrics, gold standard datasets and tools for systematically testing and evaluating the accuracy of newly developed assays and methods.
• Work closely in collaboration with the Laboratory and Assay R&D team.
• Drive projects to completion by passionately doing and anticipating what needs to be done.
• Strong team-oriented work ethic with open, honest, and considerate communication skills.
• Collaborate with other scientists, engineers, and clinicians.
• Familiarity with different assays and modes of sequencing (WGS vs. Exome, RNA-seq).
• Works closely with all levels of staff, customers and improvement teams to determine analytic needs and requirements
• Independently develops quantitative approaches to identify opportunities for performance improvement.
• Proactively educates the requester of any complexities associated with the data requests.

Skills on Resume: 

• DNA and RNA Sequencing (Hard Skills)
• Quality Control (Hard Skills)
• Collaboration (Soft Skills)
• Project Management (Soft Skills)
• Communication (Soft Skills)
• Sequencing Assays (Hard Skills)
• Data Management (Hard Skills)

Job Summary: 

• Strategically considers all potential uses for available data, and how to transform disparate data into useful data.
• Provide informatics support in variant screening and interpretation, including support of translational research projects.
• Assist in mining/annotation of genomic and clinical data with a strong understanding of the principles of genetics
• Uses multiple programming languages to develop and maintain bioinformatic pipelines for genomic applications.
• Conducts independent quantitative operational, clinical, and financial analysis 
• Clearly summarized findings and recommendations for technical and clinical and non-technical and clinical audiences.
• Performs assessments to ensure and understand accuracy, quality, integrity and validity of data and analysis in all work.
• Translates project-specific analysis into ongoing, automated reporting tools
• Participates in the development, implementation, and enforcement of data management standards and procedures.
• Identifies potential outcome analysis, goals of intervention, and basic evaluation structure in the planning phases of research projects.
• Provides guidance, feedback, and input in the development of protocols and research proposals.
• Performs statistical analysis (SAS or R programming) to evaluate the success of project implementation.

Skills on Resume: 

• Data Strategy (Hard Skills)
• Variant Screening (Hard Skills)
• Data Mining/Annotation (Hard Skills)
• Bioinformatic Pipeline (Hard Skills)
• Quantitative Analysis (Hard Skills)
• Communication (Soft Skills)
• Quality Assessment (Hard Skills)
• Tool Development (Hard Skills)

Job Summary: 

• Perform analysis of high-throughput microarray and Next Generation Sequencing (NGS) based biological data
• Actively participate in multidisciplinary teams to execute assigned projects
• Support existing products by addressing internal and external requests
• Detect, monitor, and investigate issues observed in Laboratory Operations
• Determine if diagnostic results are affected, and find solutions
• Transfer new products from Research through Product Development to Laboratory Operations
• Identify and validate process and product improvements, e.g. to reagents, workflows, equipment, algorithms, and software
• Assists the Senior Director, Product Support in planning and directing the technical work of other members of Product Support
• Advises the other members of Product Support on more challenging and/or problematic projects
• Exercises independent judgment, discretion, initiative, and resourcefulness in defining and executing Product Support projects

Skills on Resume: 

• Data Analysis (Hard Skills)
• Collaboration (Soft Skills)
• Product Support (Hard Skills)
• Issue Detection (Hard Skills)
• Troubleshooting (Hard Skills)
• Product Development (Hard Skills)
• Process Improvement (Hard Skills)
• Leadership (Soft Skills)

Job Summary: 

• Analyze biomedical data produced from a variety of biotechnology platforms 
• Modifies and operates data analysis pipelines under direct supervision
• Uses bioinformatics pipelines or extant software in conducting data analysis for biomedical datasets
• Works closely with senior analysts and scientists to generate/provide analysis results and reports, project reports and perform requested custom analyses
• Performing basic statistical analysis of results
• Support ongoing Clinical Study data analysis and software development and maintenance
• Communicate project status and analysis results in a clear, concise manner to the relevant audience
• Ensure compliance with CAP, CLIA, ISO and FDA regulations and oversight
• Follow all Agendia health and safety policies and procedures

Skills on Resume: 

• Biomedical Data (Hard Skills)
• Data Analysis (Hard Skills)
• Bioinformatics Software (Hard Skills)
• Collaboration (Soft Skills)
• Statistical Analysis (Hard Skills)
• Clinical Study (Hard Skills)
• Communication (Soft Skills)
• Regulatory Compliance (Hard Skills)

Job Summary: 

• Using statistical methods and implementation of algorithms, and extracting meaningful insights from spatial transcriptomics data.
• Apply algorithms to assess the significance of observed differences across samples, spatial domains, or single cells.
• Implement prototypes and tools, document solutions for customers, and tailor solutions to client needs.
• Work closely with bench scientists to understand, analyze and help interpret the genomic data
• Analyze various types of sequencing data analysis (e.g. RNA-seq, ChIP-seq, ATAC-seq, Hi-C-seq, bisulfite sequencing, whole-genome sequencing)
• Mine databases for hypothesis generation or validating information
• Perform robust data quality control and validation, and manage data sets on genome browsers
• Adapt genomic data analysis pipelines in a rapidly evolving research environment
• Develop novel methods for multi-omics data analysis and integration

Skills on Resume: 

• Statistical Analysis (Hard Skills)
• Algorithm Implementation (Hard Skills)
• Tool Development (Hard Skills)
• Collaboration (Soft Skills)
• Data Analysis (Hard Skills)
• Database Mining (Hard Skills)
• Quality Control (Hard Skills)
• Pipeline Adaptation (Hard Skills)

Job Summary: 

• Design, develop and maintain complex bioinformatics pipelines to support the analysis of high-throughput clinical and research data
• Analyze and interpret high-throughput genomic data generated by next-generation sequencing platforms
• Organize results into clear presentations and concise summaries of work, in formats useful for scientific interpretation
• Contribute to a team effort in designing, developing and deploying custom scripts to support the analysis of high-throughput data
• Maintain experience with state-of-the-art bioinformatics tools and data repositories
• Assist other PIs and researchers in the research study by performing scientific analysis using open-source tools and custom scripts
• Maintain detailed documentation of pipeline runs and validation/benchmarking projects, following CLIA/CAP standards
• Work collaboratively with team members, and ensure a seamless transition of work when planning to be absent from the office
• Investigate problems and develop techniques and procedures that are recognized as being difficult
• Collaborate with staff on projects from inception through laboratory investigation to clinical translation.
• Contribute to projects from inception through laboratory investigation to clinical translation solutions.
• Provide collaborative assistance to other Research Scientists that require the incumbent's expertise.

Skills on Resume: 

• Bioinformatics Pipeline (Hard Skills)
• Data Analysis (Hard Skills)
• Presentation (Soft Skills)
• Script Development (Hard Skills)
• Bioinformatics Tools (Hard Skills)
• Scientific Analysis (Hard Skills)
• Documentation (Hard Skills)
• Seamless Workflow (Soft Skills)

Job Summary: 

• Process production runs and analyze resulting sequencing data processed through OncoK9 assay
• Leading weekly Review Board meetings
• Perform data analysis of development runs to inform algorithm design and product iterations
• Identify and recommend usability and algorithmic improvements to production software
• Perform rapid troubleshooting of sequencing runs
• Write Engineering Reports documenting critical analyses and results
• Serve as point of comment for therapy decision support effort
• Continually review relevant scientific advances and recommend product improvements 
• Present results to internal team members and company advisors

Skills on Resume: 

• Data Analysis (Hard Skills)
• Meeting Facilitation (Soft Skills)
• Algorithm Development (Hard Skills)
• Software Improvement (Hard Skills)
• Troubleshooting (Hard Skills)
• Technical Report Writing (Hard Skills)
• Continuous Learning (Soft Skills)

Job Summary: 

• Maintain documentation of existing issues, fixes, and progress.
• Meet deadlines and turnaround times set by managers and department directors
• Establish processes to handle business requests to the Enterprise Analytics Omics Initiative efficiently and effectively.
• Manage routine and special projects that require oversight of other departments' work and coordinate a wide variety of functions.
• Helps guide and assist in the creation of data standards for the Enterprise Analytics Omics Initiative.
• Investigate variances in data consistency and integrity 
• Assist in providing technically sound solutions
• Implement and monitor the effectiveness of these solutions.
• Guide peers and serve as a reference point for questions.

Skills on Resume: 

• Documentation Management (Hard Skills)
• Time Management (Soft Skills)
• Process Establishment (Hard Skills)
• Project Management (Soft Skills)
• Standardization Development (Hard Skills)
• Data Quality Investigation (Hard Skills)
• Problem-Solving (Hard Skills)
• Peer Guidance (Soft Skills)

Job Summary: 

• Applies existing or develops new analysis strategies/algorithms suitable for -omics data analysis.
• Develops bioinformatics software for processing, analysis, and management of –omics data.
• Prepares reports to summarize –omics data.
• Keeps up-to-date with analytical methods and software for analyzing–omics data.
• Writes well-documented computer code, and conducts code reviews and programming validation 
• Authors or contributes to manuscripts and/or scientific presentations.
• Provide statistical input for the development of clinical study protocols with -omics endpoints to ensure that the design and methods are scientifically valid and feasible.
• Writes analysis plans that outline analysis strategies/algorithms for -omics data analysis.
• Contributes to study reports including results interpretation to be distributed to internal and external monitoring committees and regulatory bodies.

Skills on Resume: 

• Analysis Strategy (Hard Skills)
• Bioinformatics Software (Hard Skills)
• Report Preparation (Hard Skills)
• Knowledge Maintenance (Hard Skills)
• Code Documentation (Hard Skills)
• Scientific Writing (Hard Skills)
• Clinical Study Protocols (Hard Skills)
• Analysis Plan (Hard Skills)

Job Summary: 

• Find and capture multi-omic datasets and prepare them for submission to, and presentation in, gEAR.
• Providing biological insight to curate dataset collections into meaningful themes 
• Help researchers easily access and understand evidence from multiple studies.
• Work with other analysts at IGS to provide help-desk support to gEAR users
• Work with other analysts and engineers at IGS to add functionality to the gEAR. 
• Helping to build new tools for data visualization and interpretation of cutting-edge data types, such as single-cell data and spatial transcriptomics.
• Follow established procedures or specific scientific protocols for data curation or analysis.
• Organize primary and derived data into databases, displays, or graphic presentations for publication or web presentation.
• Participate in group/project meetings to present and discuss progress and results.
• Participate in community outreach and training through the development and teaching of gEAR-related workshops, webinars, and other outreach events.

Skills on Resume: 

• Data Acquisition (Hard Skills)
• Dataset Curation (Hard Skills)
• Data Accessibility (Soft Skills)
• User Support (Soft Skills)
• Software Development (Hard Skills)
• Tool Development (Hard Skills)
• Procedures and Protocols (Hard Skills)
• Data Organization (Hard Skills)

Job Summary: 

• Prepare detailed specifications from which programs will be written.
• Design, code, test, debug, document and maintain programs.
• Design and develop research software, configure and customize third-party software.
• Prepare all necessary program documentation, and advise on hardware and software decisions.
• Apply existing custom research software to both well-defined and complex problems.
• Provide technical guidance and work direction to lower-level information systems personnel.
• Preparing sample annotations according to metadata specifications and ontologies
• Importing the data into the platform, designing and running processing pipelines
• Running analyses such as differential expression and pathway analyses, then storing those results in the system
• Add datasets to existing RShiny apps, extend/improve or create new Rshiny apps

Skills on Resume: 

• Software Specification (Hard Skills)
• Software Development (Hard Skills)
• Research Software Design (Hard Skills)
• Documentation Preparation (Hard Skills)
• Custom Software (Hard Skills)
• Leadership (Soft Skills)
• Data Annotation (Hard Skills)
• Data Analysis (Hard Skills)

Job Summary: 

• Collaborate with the PI, postdoctoral fellows, and graduate students 
• Define software and analysis requirements and implement desired specifications.
• Execute analysis using existing software tools.
• Design and code new systems and/or modifications
• Track project data and report analysis results.
• Communicate with team members in both computational and experimental biology areas.
• Analyzing large volumes of NGS data
• Develop novel algorithms and production pipelines
• Work well in a team environment, manage projects, and work with lab scientists
• Report and publish findings with good communication (written and verbal) skills

Skills on Resume: 

• Collaboration (Soft Skills)
• Requirement Definition (Soft Skills)
• Analysis Execution (Hard Skills)
• Software Design (Hard Skills)
• Data Tracking (Soft Skills)
• Communication (Soft Skills)
• Data Analysis (Hard Skills)
• Algorithm Development (Hard Skills)

Job Summary: 

• Provides consultation to customers on appropriate data management, methodological issues and statistical analyses.
• Develops and maintains documentation of the process for quality assurance and reporting methodology
• Develops queries and quality metrics, and determines data structure for local datasets.
• Interprets results using a variety of techniques, ranging from simple data aggregation via statistical analysis to complex statistical analysis.
• Develops and documents standards for data quality and regulatory compliance about reporting.
• Ensures quality and compliance by reviewing reports, and recommends staff hires/terminations.
• Provides work direction and/or supervises staff such as team members, subordinates, contractors, vendors, students, etc.
• Manages projects ensuring timelines and deliverables are met and meet expectations.

Skills on Resume: 

• Quality Assurance (Hard Skills)
• Data Structuring (Hard Skills)
• Statistical Analysis (Hard Skills)
• Regulatory Compliance (Hard Skills)
• Quality Assurance (Soft Skills)
• Leadership (Soft Skills)
• Project Management (Soft Skills)

Job Summary: 

• Organizing and managing large-scale sequencing data sets
• Manipulating and formatting data with Python, Perl, and UNIX tools
• Using established open-source software and tools to assess quality and analyze data
• Running analyses on a high-performance computing cluster
• Using Unix or a scripting language to extract meaningful results from the output
• Using software or genome browsers for visualization
• Establishing general bioinformatics resources for day-to-day use by colleagues
• Using established databases and techniques for annotating genetic variants and results from expression/epigenetics experiments
• Consulting with UVA investigators on experimental design, results interpretation, and grant and manuscript preparation

Skills on Resume: 

• Data Sets (Hard Skills)
• Data Manipulation (Hard Skills)
• Open-Source Software (Hard Skills)
• Computing Cluster (Hard Skills)
• Scripting Languages (Hard Skills)
• Genome Browsers (Hard Skills)
• Bioinformatics Resources (Hard Skills)
• Experimental Consulting (Soft Skills)

Job Summary: 

• Develop and maintain database, and analyze and qualify data
• Document scripts and produce reports and presentations
• Collaborate with an internal team of computational biologists, scientists, and developers to produce and maintain the database
• Write, test, and deploy scripts for data cleaning and database management
• Acquire datasets from public databases as well as from internal sources
• Establish data infrastructure and analytics tools that meet operational and regulatory requirements
• Carrying out alignment and variant calling, family-based analyses and burden and association testing
• Benchmarking genome analysis pipelines, monitoring the quality of WGS data
• Performing computational analyses for a range of projects

Skills on Resume: 

• Database Management (Hard Skills)
• Data Analysis (Hard Skills)
• Scripting and Documentation (Hard Skills)
• Collaboration (Soft Skills)
• Data Acquisition (Hard Skills)
• Infrastructure and Tools (Hard Skills)
• Genomic Analysis (Hard Skills)

Job Summary: 

• Understand genetic and biological principles to guide the analyses and interpretation of NGS data. 
• Independently provides troubleshooting for data generation and processing. Implements triaging and generates reports.
• Develops, implements, and refines bioinformatic workflows and tools for analyzing and visualizing NGS data. 
• Emphasis on visual and quantitative integration of multiple NGS modalities (i.e. RNA-Seq and ChIP-Seq).
• Adapts bioinformatics tools, visualization packages, and annotation resources for research projects 
• Independently and accurately perform research analysis - flexibility and competency in data wrangling.
• Maintains a professional level of knowledge of molecular biology and genetics
• Maintain state-of-the-art analyses and workflows. 
• Works closely with laboratory team to integrate NGS data to formulate biologic pathways
• Leads the analysis and writing for a portfolio of projects and methods development. 
• Contributes to collaborative research publications. 
• Presents regular project updates at meetings with collaborators.

Skills on Resume: 

• Bioinformatics Tools (Hard Skills)
• Research Analysis (Hard Skills)
• Molecular Biology (Hard Skills)
• State-of-the-Art Analyses (Hard Skills)
• Collaboration (Soft Skills)
• Leadership (Soft Skills)
• Presentation (Soft Skills)

Job Summary: 

• Analyzes genomic data from patients and families for keystone IGM projects encompassing rare inherited conditions, epilepsy, cancer, and behavioral health.
• Identify genomic variants that contribute to these conditions.
• Execute standardized genomic data analysis pipelines, filter and review genomic variants uncovered, and assess/interpret the contribution to patient conditions
• Collect and evaluate sequencing metrics such as alignment rates, coverage, and genotype concordance for sequenced samples.
• Using NGS analysis tools such as IGV, Samtools, Picard, VarScan, GATK, and PLINK to review, manipulate, and interpret NGS data.
• Build and maintain awareness of the latest approaches for genomic analysis, variant interpretation, and gene discovery.
• Evaluate genomic analysis tools and/or develop new ones to meet the analysis needs of IGM studies.
• Interface with investigators, clinicians, genetic counselors, and laboratory directors to obtain information necessary for analyses and to communicate the results.
• Assist with the preparation of internal/external presentations, scientific manuscripts, and grant applications related to work.

Skills on Resume: 

• Data Analysis (Hard Skills)
• Variant Identification (Hard Skills)
• Data Analysis (Hard Skills)
• Metrics Evaluation (Hard Skills)
• NGS Analysis (Hard Skills)
• Genomic Analysis (Hard Skills)
• Analysis Tools (Hard Skills)
• Communication (Soft Skills)

Job Summary: 

• Integrate new public and in-house methods into the neoantigen pipeline
• Collaborate with bioinformatics engineers and scientists to develop and test new methods.
• Redevelop and deploy the neoantigen pipeline as a containerized workflow in the cloud environment, to be eventually used in the clinic.
• Unit and system testing, both for robustness and correctness, develop tools to simulate specific types of tumor sequencing data.
• Develop automated analysis methods to assess data quality and features using appropriate statistical models and machine learning.
• Operates, and troubleshoots, and improves analytic tools, notifies Supervisor when complex problems occur.
• Implement and adapt bioinformatics methods and pipelines 
• Write scripts and software programs to implement, adapt, revise, and assemble bioinformatics software methods/pipelines for multiomics data analysis and visualization.
• Reporting and documenting workflow performance 
• Preparing and keeping track of documentation on the reported issues and solutions regularly.

Skills on Resume: 

• Bioinformatics (Hard Skills)
• Cloud Computing (Hard Skills)
• Software Development (Hard Skills)
• Collaboration (Soft Skills)
• Quality Assurance (Hard Skills)
• Data Analysis (Hard Skills)
• Problem-Solving (Soft Skills)
• Reporting (Soft Skills)

Job Summary: 

• Design and develop and maintain a variety of standard and non-routine computational sequence analysis tools 
• Model and analyze molecular biological and sequencing data.
• Work collaboratively with scientific project teams and other Core laboratories 
• Guide users through experimental design, quality control of sequence data, and interpretation of gene expression patterns.
• Independently create, set up and manage large biological computer databases.
• Design and develop computational sequence analysis methods for database searches
• Utilizing existing or developing new algorithms, techniques, and computational statistical methodologies and theories to analyze datasets.
• Maintain the computational infrastructure, as well as control the flow of samples and information for project studies.
• Troubleshoot or modify procedures, and provide consultation and training 
• Provide web-based bioinformatics and access to public and proprietary relational databases.
• Assist in designing projects to complete research plans, and guide departmental personnel.

Skills on Resume: 

• Tool Development (Hard Skills)
• Data Analysis (Hard Skills)
• Teamwork (Soft Skills)
• Quality Control (Hard Skills)
• Database Management (Hard Skills)
• Sequence Analysis (Hard Skills)
• Statistical Methodologies (Hard Skills)
• Infrastructure Management (Hard Skills)